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Michael john donoghue

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185. Howarth, D. G. and M. J. Donoghue. 2009. Duplications and expression of DIVARICATA-like genes in Dipsacales. Mol. Biol. Evol. 26: 1245-1258.

186. Moore, B. A. and M. J. Donoghue. 2009. A Bayesian approach for evaluating the impact of historical events on rates of diversification. Proc. Nat. Acad. Sci. USA 106: 4307-4312.

187. Smith, S. A., J. M. Beaulieu, and M. J. Donoghue. 2009. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches. BMC Evolutionary Biology 9: 37.

188. Donoghue et al. 2009. BioGENESIS: Providing an Evolutionary Framework for Biodiversity Science. DIVERSITAS Report NO. 6, 52 pp.

189. Smith, S. A., J. M. Beaulieu, and M. J. Donoghue. 2010. An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants. Proc. Nat. Acad. Sci. USA 107: 5897-5902.

190. Tank, D. C. and M. J. Donoghue. 2010. Phylogeny and phylogenetic nomenclature of the Campanulidae based on an expanded sample of genes and taxa. Syst. Bot. 35: 425-441.

191. Smith, S. A. and M. J. Donoghue. 2010. Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). Syst. Biol. 59: 322-341. (Excellence in Systematic Research Award for the best paper published in Systematic Biology based on student research, 2010)

192. Donoghue, M. J. and J. Pickering. 2010. Experiencing green pigeons. Pp. 243-251 in The Art of Ecology -- Writings of G. Evelyn Hutchinson. D. Skelly, D. Post, and M. Smith, eds., Yale Univ. Press, New Haven.

193. Donoghue, M. J., and P. D. Cantino. Campanulidae. 2010. Pp. xx-yy in K. de Queiroz, P. D. Cantino and J. Gauthier (eds.), Phylonyms: A Companion to the PhyloCode. University of California Press, Berkeley (in press).

194. Hendry, A. P., L. G. Lohmann, E. Conti, J. Cracraft, K. A Crandall, D. P. Faith, C. Hauser, C. A. Joly, K. Kogure, A. Larigauderie, S. Magallon, C. Moritz, S. Tillier, R. Zardoya, A-H Prieur-Richard, B. Walther, T. Yahara, and M. J. Donoghue. 2010. Evolutionary biology in biodiversity science, conservation and policy: A call to action. Evolution 64: 1517-1528.

195. Davis, C. C., E. J. Edwards, and M. J. Donoghue. 2010. A clades-eye view of global climate change. Pp. 623-627 in Bell, M. A., D. J. Futuyma, W. F. Eanes, and J. S. Levinton (eds.). Evolution since Darwin: The First 150 Years. Sinauer, Sunderland, MA.

196. Yahara, T., M. J. Donoghue, R. Zardoya, D. P. Faith, J. Cracraft. 2010. Genetic diversity assessment in the century of genome science. Curr. Opinion Environ. Sustainability 2: 43-49.

197. Faith, D. P., S. Magallon, A. P. Hendry, E. Conti, T. Yahara, and M. J. Donoghue. 2010. Evosystem services: An evolutionary perspective on the link between biodiversity and human well-being. Curr. Opinion Environ. Sustainability 2: 66-74.

198. Clement W. L. and M. J. Donoghue. 2011. Dissolution of Viburnum section Megalotinus (Adoxaceae) of Southeast Asia and its implications for morphological evolution and biogeography. Int. J. Plant Sci. 172: 559-573.

199. Soltis D. E. et al. (25 others). 2011. Angiosperm phylogeny: 17 genes, 640 taxa. Amer. J. Bot. 98: 704-730.

200. Howarth, D. G., T. Martins, E. Chimney, and M. J. Donoghue. 2011. Diversification of CYCLOIDEA expression in the evolution of bilateral flower symmetry in Caprifoliaceae (Dipsacales). Annals of Botany 107: 1521-1532.

201. Smith, S. A., J. M. Beaulieu, A. Stamatakis, and M. J. Donoghue. 2011. Understanding angiosperm diversification using small and large phylogenetic trees. Amer. J. Bot. 98: 404-414.

202. Evans, M. K., D. J. Hearn, K. E. Theiss, K. Cranston, K. E. Holsinger, and M. J. Donoghue. 2011. Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera). New Phytologist 191: 555–563.

203. Desurmont, G. A., M. J. Donoghue, Wendy L. Clement, and A. A. Agarwal. 2011. Evolutionary history predicts plant defense against an invasive pest. Proc. Nat. Acad. Sci. USA 108: 7070-7074.

204. Donoghue, M. J. 2011. Bipolar biogeography. Proc. Nat. Acad. Sci. USA 108: 6341-6342.

205. de Queiroz, K. and M. J. Donoghue. 2011. Phylogenetic nomenclature, three-taxon statements, and unnecessary name changes. Syst. Biol. 887-892.

206. Goff, S. A. et al. (65 authors). 2011. The iPlant Collaborative: Cyberinfrastructure for plant biology. Frontiers in Plant Science 2: 1-16.

207. Carlson, S.E., Howarth, D.G., and M.J. Donoghue. 2011. Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences. BMC Evolutionary Biology 11: 325.

208. Greenberg, A. K. and M. J. Donoghue. 2011. Molecular systematics and character evolution in Caryophyllaceae. Taxon 60: 1637-1652.

209. Lo, E. Y. Y. and M. J. Donoghue. 2012. Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae). Mol. Phylo. Evol. 63: 230-243.

210. Wheeler, Q. D. et al. (38 others) 2012. Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity. Systematics and Biodiversity 10: 1-20.

211. Carlson, S.E., Linder, H.P., and M.J. Donoghue. 2012. The historical biogeography of Scabiosa (Dipsacaceae): implications for Old World arid plant disjunctions. Jour. Biogeography 39: 1086-1100.

212. Beaulieu, J. M., R. H. Ree, J. Cavender-Bares, N. Deacon, S. W. Kembel, G. D. Weiblen, and M. J. Donoghue. 2012. Synthesizing phylogenetic knowledge for ecological research. Ecology 93: S4-S13.

213. Boyden, G. S., M. J. Donoghue, and D. G. Howarth. 2012. Duplications and expression of RADIALIS-like genes in Dipsacales. Int. Jour. Plant Sci. (in press).

214. Weber, M. G., M. J. Donoghue, W. L. Clement, and A. A. Agarwal. 2012. Phylogenetic and experimental tests of interactions among mutualistic plant defense traits in Viburnum (Adoxaceae). Amer. Nat. 180: 450-463.

215. Clement W. L. and M. J. Donoghue. 2012. Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms. BMC Evolutionary Biology 12: 73.

216. de Queiroz, K. and M. J. Donoghue. 2012. Phylogenetic nomenclature, hierarchical information, and testability. Syst. Biol. doi:10.1093/sysbio/sys054

217. Schmerler, S., W. Clement, J. Beaulieu, D. Chatelet, L. Sack, M. J. Donoghue, and E. Edwards. 2012. Evolution of leaf form correlates with tropical-temperate transitions in Viburnum (Adoxaceae). Proc. Roy. Soc. B doi:10.1098/rspb.2012.1110.

218. Davis, C. C., H. Schaefer, W. R. Anderson, Z. Xi, D. A. Baum, M. J. Donoghue, and L. J. Harmon. 2012. Long-term morphological stasis maintained by a plant-pollinator mutualism. Proc. Nat. Acad. Sci. USA (in review).

219. Diaz, S., A. Purvis, J. H. C. Cornelissen, G. M. Mace, M. J. Donoghue, R. M. Ewers, P. Jordano, and W. D. Pearse. 2012. Phylogeny of function and the vulnerability of ecosystsms. PLoS Biology (in review).

220. Leslie, A. B., J. M. Beaulieu, H. Rai, P. R. Crane, M. J. Donoghue, and S. Mathews. 2012. Hemisphere-scale differences in conifer evolutionary dynamics. Proc. Nat. Acad. Sci. USA (in press).

221. Carlson, S. E., M. E. K. Evans, V. Mayer, and M. J. Donoghue. The influence of climate on dispersal and life history evolution in Lomelosia (Dipsacaceae). Amer. Nat. (in review).

222. Beaulieu, J. M., D. C. Tank, and M. J. Donoghue. A Southern Hemisphere origin for campanulid angiosperms and traces of the break-up of Gondwana. Syst. Biol. (in review).

223. Donoghue, M. J. 2012. Preface. El arbol de la vida: sistemática y evolución de los seres vivos. R. Zardoya and P. Vargas, Editors Madrid, Spain.

224. Donoghue, M. J. 2012. Historical biogeography. Princeton Guide to Evolution, J. Losos, Ed., Princeton Univ. Press, New Jersey.

June 2012
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