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Bac clone est (siu id)


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Additional file 3: Table of ESTs found on major linkages groups of soybean in build 4. BACs that hybridized to ESTs sorted by linkage group to identify ESTs found on the different MLGs.



BAC clone

EST (SIU ID)

GenBank Acc. No.

EST homolog

Contig No.

MLG

B09E12

Fi51P22

BI347334

EST

ctg192

A1

B09E12

FiS1J16

BI119556

Glycine max nodulin 22 gene.

ctg192

A1

B09E12

FiS1J20

BI119558

Cicer arietinum partial mRNA for putative water channel protein

ctg192

A1

H15I03

FiS1J15

BI273659

EST

ctg9301

A1 & G

H15I03

FiS1J17

BI273660

EST

ctg9301

A1 & G

H15I03

FiS1J21

BI273630

Medicago sativa eukaryotic translation initiation factor 5A-2 mRNA, complete cds.

ctg9301

A1 & G

H15I03

FiS1N18

BI119551

chalcone synthase [soybeans, mRNA, 1119 nt].

ctg9301

A1 & G

B24C11

Gm-r1021-3B19

AI443896

Aspartate aminotransferase 1

ctg2704

A2 & C2

B36N10

Gm-r1021-6M24

AI461071

Beta tubulin

ctg9161

B1

B54F19

Fi36H20

CF675620

Vicia faba 5.8S, 18S and 25S ribosomal RNA genes and ITS regions

ctg9140

B1 & G

B45H04

Fi55C1

BI347336

EST

ctg2784

B2 & I

H22H05

Gm-r1021-3H12

AI441809

Beta-galactosidase

ctg3036

C2

H22H05

Gm-r1021-6D10

AI460671

Kinesinlike protein A

ctg3036

C2

H24L07

FiS1K4

BI273664

Leghemoglobin [Psophocarpus tetragonolobus=winged-beans, nodule, mRNA,

ctg3310

C2

H57O09

Gm-r1021-5K20

AI440721

MAP kinase kinase alpha protein kinase

ctg9357

C2

H57O09

Gm-R1021-6J19

AI460618

Calmodulin-stimulated calcium ATPase

ctg9357

C2

H65B14

FiS1B12

BI119565

Solanum tuberosum mRNA for putative membrane protein (poni2 gene).

ctg196

D1AQ

H46H10

Gm-r1021-2L12

AI437773

Cytochrome P450

ctg8188

D1AQ

B35O18

Fi37A24

BI347331

EST

ctg9088

D1AQ

B35O18

FiS1A16

BI119554

Glycine max ADR12 mRNA

ctg9088

D1AQ

B35O18

FiS1A17

BI119550

Glycine max actin (Soy57) gene, partial cds

ctg9088

D1AQ

B35O18

FiS1B12

BI119565

Solanum tuberosum mRNA for putative membrane protein (poni2 gene).

ctg9088

D1AQ

B35O18

FiS1H23

BI119573

Glycine max ascorbate peroxidase mRNA, complete cds

ctg9088

D1AQ

B35O18

FiS1i6

BI273669

Glycine max Williams 82 lipoxygenase mRNA, complete cds.

ctg9088

D1AQ

B35O18

FiS1J16

BI119556

Glycine max nodulin 22 gene.

ctg9088

D1AQ

H77N20

Gm-r1021-2C08

AI437977

Protein disulfide isomerase

ctg9292

D1AQ

H44P15

Gm-r1021-2I23

AI437632

4-Coumarate CoA ligase 1

ctg9361

D1BW

H16G17

FiS1D8

BI118914

Solanum tuberosum mRNA for plastidic ATP/ADP-transporter

ctg3822

E

H29A08

FiS1i6

BI273669

Glycine max Williams 82 lipoxygenase mRNA, complete cds.

ctg9306

E

H31N21

FiS1i6

BI273669

Glycine max Williams 82 lipoxygenase mRNA, complete cds.

ctg9306

E

H33O15

Gm-r1021-2H06

AI437704

Cellulose synthase

ctg9349

E

H41N24

FiS1i6

BI273669

Glycine max Williams 82 lipoxygenase mRNA, complete cds.

ctg2167

G

H70M18

FiS1J23

BI245398

Glycine max farnesylated protein GMFP5 mRNA, partial cds.

ctg8113

G

B38J20

FiS1B16

BI119568

EST

ctg9011

G

H77P02

Gm-r1021-7D20

AI441758

Flavonol synthase

ctg9354

G

H45E21

FiS1i9

BI245403

Phaseolus acutifolius alcohol dehydrogenase-1F mRNA, complete CDS.

ctg9242

G & M

H45E21

FiS1O7

BI273688

Nicotiana tabacum DNA-directed RNA polymerase IIa mRNA, complete cds.

ctg9242

G & M

H45E21

FiS2B1D1

No Acc. No.

Cypripedium arietinum mRNA for class I type 2 metallothionein (clone: CanMT-2).

ctg9242

G & M

H35I01

Gm-r1021-3K03

AI442658

Calcium binding protein isolog

ctg1120

H

H35I01

Gm-r1021-5J01

AI441021

Calciumdependent protein kinase

ctg1120

H

B17O12

FiS1M22

BI273681

Oryza sativa genomic DNA, chromosome 1, PAC clone:P0408C03, complete sequence.

ctg1738

H

H06B23

Gm-r1021-2F03

AI437497

Calretulin

ctg9056

I

H24J01

Gm-r1021-1P11

AI444099

3-Isopropylmalate dehydratase, leud subunit.

ctg641

J

H19B13

Gm-r1021-4D05

AI440931

1-Aminocyclopropane-1-carboxylate oxidase

ctg2108

K

H76O12

FiS1J20

BI119558

Cicer arietinum partial mRNA for putative water channel protein

ctg9311

L

B35G12

FiS1B14

BI119567

Glycyrrhiza echinata mRNA for O-methyltransferase, complete cds.

ctg1378

O

B10B20

Fi58L6

BI347338

EST

ctg9210

O

B51L05

Gm-r1021-5J01

AI441021

Calciumdependent protein kinase

ctg9210

O

B02G20

Gm-r1021-6J24

AI522819

Waterstress induced tonoplast intrinsic protein

ctg1079

Queue

B51H17

FiS1C22

BI245396

EST

ctg116

Queue

E76J17

FiS1C22

BI245396

EST

ctg116

Queue

B40C23

FiS1N22

BI273685

EST

ctg1261

Queue

B40C23

FiS1O1

BI273676

Phenylalanine ammonia-lyase [soybeans, mRNA, 1427 nt].

ctg1261

Queue

B48E15

FiS1B16

BI119568

EST

ctg1277

Queue

B48E15

FiS1H23

BI119573

Glycine max ascorbate peroxidase mRNA, complete cds

ctg1277

Queue

B46H23

FiS1N17

BI273683

EST

ctg1350

Queue

B46H23

FiS1N21

BI273684

EST

ctg1350

Queue

H31J02

Gm-r1021-2B16

AI437902

Threonine synthase

ctg1443

Queue

H31J02

Gm-r1021-2E06

AI437535

Quinone oxidoreductase

ctg1443

Queue

H31J02

Gm-r1021-3H12

AI441809

Beta-galactosidase

ctg1443

Queue

H31J02

Gm-r1021-5K20

AI440721

MAP kinase kinase alpha protein kinase

ctg1443

Queue

H31J02

Gm-r1021-6D10

AI460671

Kinesinlike protein A

ctg1443

Queue

H55O24

FiS1G18

BI273653

Glycine max SbPRP1 gene encoding a proline-rich protein, complete cds.

ctg1474

Queue

H14L10

FiS1C3

BI245397

Glycine max sucrose synthase (SS) mRNA, complete cds.

ctg1484

Queue

H12B22

FiS1J20

BI119558

Cicer arietinum partial mRNA for putative water channel protein

ctg1519

Queue

B15A19

FiS1i7

BI273640

EST

ctg1632

Queue

H58J12

FiS1N17

BI273683

EST

ctg1633

Queue

H58J12

FiS1N21

BI273684

EST

ctg1633

Queue

H39A16

Gm-r1021-1D08

AI443444

Proline-rich 14 KDA protein

ctg1751

Queue

H39A16

Gm-r1021-1M21

AI442373

4-Coumarate:CoA ligase isoform 2

ctg1751

Queue

H39A16

Gm-r1021-2B16

AI437902

Threonine synthase

ctg1751

Queue

H39A16

Gm-r1021-2C03

AI444115

7-O-methyltransferase

ctg1751

Queue

H39A16

Gm-r1021-2C08

AI437977

Protein disulfide isomerase

ctg1751

Queue

H39A16

Gm-r1021-2C14

AI437618

Glycine cleavage system H protein precursor

ctg1751

Queue

H39A16

Gm-r1021-2E06

AI437535

Quinone oxidoreductase

ctg1751

Queue

H39A16

Gm-r1021-2F06

AI437703

Calmodulin

ctg1751

Queue

H39A16

Gm-r1021-2F09

AI438014

Epoxide hydrolase

ctg1751

Queue

H39A16

Gm-r1021-3H12

AI441809

Beta-galactosidase

ctg1751

Queue
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